GgaEX1041522 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11414032-11425221:+
Coord C1 exon
chr5:11414032-11414185
Coord A exon
chr5:11420174-11420281
Coord C2 exon
chr5:11425083-11425221
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTATATATATTTTTTAATAGTCT
3' ss Score
5.32
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
CACACAGTTGCCCAGTTGGGCAGATTTATATTAACTGCAGTAATTCAAAAGTTGATGCTGAGCTCAGCAGAGAGAGAACTTGCGAGAATCAACTGCTAAACCTCACTTTCTCAGCACACCTTCCTTGTGTTTCAGGTTGTGTCTGCCCTCCAGG
Seq A exon
TCTTGTTAAGCATGGGGATGTATGCTTGGAAACAGATGAATGTCCATGTTTGTGGAAAGGAAAGGAGTACTTCCCAGGTGACAAAGTGATTTCATCCTGTCATACGTG
Seq C2 exon
CATTTGCCAGCATGGATCTTTTCAATGCACCTTCCATCCGTGCCCATCCATGTGTACTGCATATGGGGATCGGCATTACAGGACATTCGATGGACTTACATATGACTTTGTTGGAACTTGTAAGGCTTATCTAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'23-27,'23-25,26-27
Average complexity
C1
Mappability confidence:
91%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(76.2=92.3)
A:
PF0182612=TIL=PD(22.2=37.8)
C2:
PF0009420=VWD=PU(19.0=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGTTGCCCAGTTGG
R:
TCGAATGTCCTGTAATGCCGA
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]