BtaEX6060083 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57353051-57356410:+
Coord C1 exon
chr15:57353051-57353261
Coord A exon
chr15:57353655-57353790
Coord C2 exon
chr15:57356304-57356410
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTGCTCCTTGGTTCCCACAGGGC
3' ss Score
10.34
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
CTTTGAGCAGCTCTGCATCAACTTTGCCAATGAGCACCTGCAGCAGTTCTTCGTGCGGCACGTGTTCAAGCTGGAGCAGGAGGAGTATGACCTGGAGAGCATTGACTGGCTGCACATTGAGTTCACAGACAACCAGGATGCCCTGGACATGATCGCCAACAAACCCATGAACATCATCTCCCTCATCGATGAGGAGAGCAAGTTCCCCAAG
Seq A exon
GGCACGGACACCACCATGTTGCATAAGCTCAACTCCCAGCACAAGCTCAACTCGAACTACATTCCCCCCAAGAACAATTACGAGACCCAGTTTGGGATCAACCACTTTGCAGGCATCGTTTACTATGAGAGTCAAG
Seq C2 exon
GCTTCCTGGAGAAGAACCGGGACACTCTGCATGGAGACATCATCCAGCTGGTGCACTCCTCCAGGAACAAGTTCATCAAGCAGATCTTCCAGGCCGATGTTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.087 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.6=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGCATCAACTTTGCCA
R:
GCACCAGCTGGATGATGTCTC
Band lengths:
257-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]