GgaEX6006867 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192396225-192397800:-
Coord C1 exon
chr1:192397590-192397800
Coord A exon
chr1:192396961-192397096
Coord C2 exon
chr1:192396225-192396331
Length
136 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCCTATGTGCACAGGGT
3' ss Score
9.15
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTTTGAGCAGCTGTGCATCAACTTTGCAAATGAGAACTTGCAGCAGTTCTTTGTGCGACACGTTTTTAAGCTGGAGCAGGAGGAGTACAACCTGGAGAACATCAACTGGCAGCACATCGAATTCACCGATAACCAGGATGCCTTGGACATGATTGCCATCAAACCCATGAACATCATCTCTCTCATTGATGAGGAGAGCAAGTTCCCCAAG
Seq A exon
GGTACAGATGCCACGATGTTACACAAGCTGAACTCCCAGCACAAGCTGAACACCAACTACATTCCTCCAAAGAATAACTATGAAACCCAGTTTGGCATTAATCATTTTGCTGGAATTGTTTACTACGAAACAAAAG
Seq C2 exon
GTTTCTTGGAGAAAAACAGGGACACGCTGCATGGAGACATCATTCAGCTGGTGCATTCATCAAAAAACAAATTCATCAAACAGATTTTCCAAGCAGATGTGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.6=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGGAGGAGTACAACCT
R:
AGCCACATCTGCTTGGAAAATCT
Band lengths:
243-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]