MmuEX6012392 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105239532-105241127:-
Coord C1 exon
chr7:105240917-105241127
Coord A exon
chr7:105240251-105240386
Coord C2 exon
chr7:105239532-105239638
Length
136 bp
Sequences
Splice sites
3' ss Seq
TAGCCACTCTGTTCCCTCAGGGC
3' ss Score
8.31
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
CTTCGAGCAGCTCTGCATTAACTTTGCCAATGAGCACCTGCAGCAATTCTTCGTGCGGCACGTGTTCAAGCTGGAGCAGGAGGAGTACGACCTGGAGAGCATCGACTGGTTGCACATTGAGTTCACTGACAACCAGGAAGCACTGGACATGATTGCCAACCGGCCTATGAACGTCATCTCCCTCATCGATGAGGAGAGCAAGTTCCCCAAG
Seq A exon
GGCACGGATGCCACCATGCTGCATAAGCTGAACTCACAGCACAAGCTCAATGCCAACTACGTGCCACCCAAGAACAGCCACGAGACCCAGTTTGGAATCAACCACTTTGCGGGTGTTGTCTATTATGAGAGTCAAG
Seq C2 exon
GCTTCCTGGAGAAGAACCGAGACACCCTGCATGGGGACATCATCCAGCTGGTCCACTCTTCCCGGAACAAGTTCATAAAGCAGATTTTCCAAGCTGACGTTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.6=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCACCTGCAGCAATTCTT
R:
ACTTGTTCCGGGAAGAGTGGA
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: