BtaEX6060545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77240836-77241308:+
Coord C1 exon
chr15:77240836-77240907
Coord A exon
chr15:77241023-77241139
Coord C2 exon
chr15:77241237-77241308
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCCACCCCCTCCAGTAC
3' ss Score
5.78
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAGCAAGCA
Seq A exon
TACCACAGCAAGGTGTCCTGCTTCATGCTGCAGCAGATCGAGGAGCCGTGCTCCCTGGGGGTCCACGCCGCTGTGGTCATCCCCCCCACCTGGATCCTCCGGGCCCGCAGGCCCCAG
Seq C2 exon
AACACCCTCAAAGCCAGCAAGAAGAAAAAAAGAGCATCCTTCAAGAGGAAGTCTAGCAAGAAAGGGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-'19-17,'19-13,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.792
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
PF0013017=C1_1=PD(28.3=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGCAGAAGTTCACCTT
R:
GGCCCTTTCTTGCTAGACTTCC
Band lengths:
138-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]