GgaEX6037734 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25821232-25821852:-
Coord C1 exon
chr5:25821781-25821852
Coord A exon
chr5:25821390-25821506
Coord C2 exon
chr5:25821232-25821303
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTCTGCTTCTCCAGTAT
3' ss Score
8.77
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTTTCCAGCAGAAGTTTGCCTTCCACAGTAAGGAGATTGTAGCCATCAGCTGTTCATGGTGCAAGCAAGCG
Seq A exon
TATCACAGCAAAGTGTCATGTTTCATGCTGCAACACATCGAAGAGCCCTGCTCATTAGGGGCTCACGCTGCTGTCGTCGTTCCTCCCACCTGGATTTTGCGGGTCCGACGGCCCCAG
Seq C2 exon
AATCCAATGAAATCCAGTAAGAAAAAGAAGAGGACATCATTCAAGCGAAAATCCAGCAAAAAGGGTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.875
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
PF0013017=C1_1=PD(28.3=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCCAGCAGAAGTTTGCC
R:
ACCCTTTTTGCTGGATTTTCGC
Band lengths:
138-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]