DreEX6100915 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7701613-7703199:+
Coord C1 exon
chr25:7701613-7701684
Coord A exon
chr25:7701788-7701904
Coord C2 exon
chr25:7703131-7703199
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTTGCCATGTGTCCTACAGTAT
3' ss Score
7.28
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
GGTTTCCAGCAGAAATTCTCCTTCCACAGTAAAGACATTGTGGCCATCAGTTGCTCATGGTGTAAACAGGCT
Seq A exon
TATCACAACAAGGTGAACTGTTTCATGATGCAGAGAATCGATGAGCCGTGTTCCCTTGGCGCTCACGCAGCTGTGATCATCCCTCCAACCTGGATTATCAGAATGCGGAGGCAGCAG
Seq C2 exon
GCATCACTGAAGAGCAGTAAAAGAAGGAAGAGAACGTCTCTGAAGGCCAAACCCAGCAAGAAATTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'7-11,'7-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.739
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
PF0013017=C1_1=PD(28.3=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCCAGCAGAAATTCTCCT
R:
TAATTTCTTGCTGGGTTTGGCCT
Band lengths:
138-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]