BtaEX6061149 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004969 | LRRC14
Description
Bos taurus leucine rich repeat containing 14 (LRRC14), mRNA. [Source:RefSeq mRNA;Acc:NM_001102379]
Coordinates
chr14:1610263-1612156:-
Coord C1 exon
chr14:1611803-1612156
Coord A exon
chr14:1611033-1611617
Coord C2 exon
chr14:1610263-1610932
Length
585 bp
Sequences
Splice sites
3' ss Seq
CAGCCCACCCATGCTCCCAGGAA
3' ss Score
3.79
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGACCTCCTGCCTGGCCTAGCGCCATGCACACCCTCGTGTTCCTGAGCACACGGCAGGTGCTCCAGTGCCAGTCAGCTGCCTGCCAGGCCCTGCCCCTGCTGCCGAGAGAGCTCTTCCCCTTGCTGTTCAAAGTGGCCTTCATGGACAAGAAGACTGTAGTGCTGCGTGAGCTGGTACACACTTGGCCTTTCCCGCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGCCGGGCCCTGCTGCAGGAGCGGCCCAGCACAGAGAGCATGCAAGCTGTGATCCTGGGCCTGACTGCCCGGCTCCACACCCCGGAGACTGAGCCTGGCACGCAGCCCCTCTGCAG
Seq A exon
GAAGCATACGCTGCGGGTGCTGGATATGACGGGCCTCCTGGATGACGGCGTGGAGCAGGACCCTGGCACCATGAGCATGTGGGATTGCACGGCAGCTGTGGCCCGCACGTGCATCGAACAGCAGCAGGGCAGGACTGCAGAGCCTGGCCAGGCCCCTGTTCCTGTGGAGGTGCGTGTGGACCTGCGGGTGAACCGGGCTTCCTATGCGTTCTTGCGGGAGGCACTCCGCAGCAGTGTAGGCAGCCCACTGCGGCTCTGCTGTCGGGACCTGCGGGCTGAGGACCTGCCCATGCGCAATACAGTGGCCCTGCTGCAGCTTCTGGATGCAGGCTGCCTGCGCCGCGTGGACTTGCGCTTCAACAACTTGGGCCTGCGCGGCCTGTCCGTCATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCTAGCCTGCGGCTGCACTATGTGCATGGGGACTCTCGACAGCCCTCTGTGGACGGTGAGGATAACTTCCGCTACTTTCTGGCCCAGATGGGCCGCTTCACCTGTCTGCGGGAGCTCAGCATGGGCTCCTCTCTCCTCTCAGGGCGGCTGGACCAGCTGCTCAG
Seq C2 exon
CACCCTGCAGAGCCCCCTGGAGAGCCTGGAGCTAGCCTTCTGTGCCCTGCTGCCTGAGGACCTGCGTTTTCTGGCACGGAGCTCCCATGCTGTCCACCTCAAGAAGTTGGACCTGAGTGGCAACGACCTGTCTGGGAGCCAGCTGGAGCCCTTCCAGGGTCTGTTGCAGGCAGCAGCAGCCACACTGTTGCACCTCGAGCTGACGGAGTGCCAGCTTGCCGATACCCAGCTGCTAGCCACACTGCCTGTGCTGACTCGTTGTGCCAGCCTCCGCTACCTCGGCCTCTACGGCAACCCACTGTCTGTGGCAGGGCTCAGGGAGCTACTGCGGGACTCGGTGGTGCAGGCTGAGCTGCGCACAGTGGTGCACCCTTTCCCTGTGGACTGCTACGAGGGCCTGCCTTGGCCACCGCCTGCCTCTGTCCTCCTGGAAGCCTCCATCAATGAGGAGAAGTTTGCCCGTGTAGAGGCCGAGTTGCACCAGTTGCTACTGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004969-'7-8,'7-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.046 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138551=LRR_8=WD(100=36.8)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTCAAAGTGGCCTTCA
R:
GTTGCCACTCAGGTCCAACTT
Band lengths:
356-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]