HsaEX6083045 @ hg19
Exon Skipping
Gene
ENSG00000160959 | LRRC14
Description
leucine rich repeat containing 14 [Source:HGNC Symbol;Acc:20419]
Coordinates
chr8:145744999-145750557:+
Coord C1 exon
chr8:145744999-145745438
Coord A exon
chr8:145745622-145746206
Coord C2 exon
chr8:145746295-145750557
Length
585 bp
Sequences
Splice sites
3' ss Seq
CACACCATTCCTACTCCCAGGAA
3' ss Score
6.45
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCACTATGCTGGGCCTTCCTACCACTTGTGTGTGGCTTGGTAGTGGCCTAGGGTCTCTCCTCCCTGCTGAAGTCCCTCTCCTGCAGGTGGCCGTCTGCCCGGCCCAGCACCATGCACACGCTTGTGTTCTTGAGCACACGGCAGGTGCTGCAGTGCCAGCCAGCTGCCTGCCAGGCCCTGCCCTTGCTGCCACGCGAACTCTTCCCCCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGTGGTACTGCGCGAGTTGGTACACACGTGGCCCTTCCCGCTGCTCAGTTTCCAGCAGCTGCTACAGGAGTGTGCCCACTGCAGCCGTGCCCTCCTGCAGGAGCGGCCTAGCACTGAGAGCATGCAGGCTGTTATCCTGGGGCTGACTGCCCGGCTCCACACCTCAGAGCCTGGGGCCAGCACACAGCCCCTCTGCAG
Seq A exon
GAAGCATGCGCTGCGGGTGCTGGACATGACGGGCCTCTTGGATGATGGTGTGGAACAGGATCCTGGCACCATGAGCATGTGGGACTGTACTGCTGCCGTAGCTCGCACATGCATTGCCCAGCAGCAGGGTGGGGCCGCAGAGCCTGGGCCAGCCCCCATCCCCGTGGAGGTGCGCGTGGACCTGCGGGTGAACCGGGCCTCCTATGCGTTCCTGCGGGAGGCACTCCGAAGCAGCGTGGGCAGCCCGCTGCGGCTCTGCTGCCGGGACCTGCGAGCTGAGGACCTGCCCATGCGCAACACTGTGGCCCTGCTGCAGCTTCTGGATGCAGGCTGCCTGCGCCGCGTGGACCTGCGCTTCAACAATCTGGGCCTGCGCGGCCTGTCTGTGATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCCAGCCTGCGGCTCCACTATGTGCATGGGGATTCAAGGCAGCCCTCCGTGGATGGCGAGGACAACTTCCGCTACTTCCTTGCCCAGATGGGCCGCTTCACCTGTCTGCGTGAGCTCAGCATGGGCTCCTCTCTCCTTTCAGGGAGGCTGGACCAGCTGCTCAG
Seq C2 exon
CACCCTGCAGAGCCCCCTGGAGAGCCTGGAGTTGGCCTTCTGTGCTCTGCTGCCTGAGGACCTACGCTTCCTGGCACGGAGCCCACATGCTGCCCACCTCAAGAAGTTGGACCTGAGTGGTAACGACCTGTCTGGCAGCCAGCTGGCACCCTTCCAGGGTCTGTTGCAGGCATCAGCAGCCACACTGTTGCATCTGGAGCTGACTGAGTGTCAGCTCGCAGACACCCAGCTGTTGGCCACACTACCCATCCTGACTCAGTGCGCCAGTCTCCGGTACCTTGGCCTCTATGGCAACCCACTGTCCATGGCGGGCCTCAAGGAGCTGCTGCGGGACTCAGTGGCACAGGCTGAGCTGCGTACTGTGGTGCACCCCTTCCCTGTGGACTGCTATGAGGGCTTGCCCTGGCCGCCGCCTGCCTCTGTCCTGCTGGAGGCCTCCATCAATGAGGAGAAGTTTGCCCGCGTAGAAGCTGAGTTGCACCAGCTGCTTCTAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160959-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138551=LRR_8=WD(100=36.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGCACTGAGAGCATGCAG
R:
GATGGGTAGTGTGGCCAACAG
Band lengths:
342-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)