RnoEX6032934 @ rn6
Exon Skipping
Gene
ENSRNOG00000016128 | Lrrc14
Description
leucine rich repeat containing 14 [Source:RGD Symbol;Acc:1560202]
Coordinates
chr7:117777324-117779318:+
Coord C1 exon
chr7:117777324-117777677
Coord A exon
chr7:117777870-117778454
Coord C2 exon
chr7:117778554-117779318
Length
585 bp
Sequences
Splice sites
3' ss Seq
CTGCCCATTCCTGCTCCCAGGAA
3' ss Score
8.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGGCCTGTCTGCCCAGTCCAGCACCATGCACACGCTTGTGTTCCTCAGCACACGCCAGGTGCTTCAGTGCCAGCCAGCTGCCTGCCAGGCCTTGCCCCTGCTGCCCCGAGAACTCTTCCCTCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGCCGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTCCTCAGTTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAACGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGACTGACCGCCCGGATACATGCTCGAGAAGCAGAGGCTGGCACACAGCCCGTTTGCAG
Seq A exon
GAAGCATACACTGCGGGTACTGGACATGACTGGCCTCCTGGATGATGGTGTGGAGCAGGATCCAGGAACCATGAGCATGTGGGACTGTACAGCGGCGGTAGCCAGAACTTGTATTGCCCAGCAGCAGGTCGGGACTGCTAAGCCAGGGCTGTCACCAGTCCCCGTGGAAATTCGTGTAGACCTTCGGGTAAACCGGGCCTCCTATACATTCCTTCGTGAGGCACTCCAGAGTAGTGTGGACAGCCTGCTGCGGCTCTGCTGCCGGGACCTCCGGGCTGAGGATCTGCCCATGCGTAACACTGTGGCCCTACTACAGCTTCTAGATGCAGGCTGTCTGCGCCGTATAGACCTGCGCTTCAATAACCTGGGCTTGCGTGGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTTCAGCACCTAGCCAGCCTGAGGCTGCATTATGTGCATGGGGACTCCAGACAGCCCTCCGTGGATGGTGAGGACAACTTTCGCTACTTCCTGGCCCAGATGGGCCGGTTCATCTGTCTTCGGGAGCTCAGCATTGGCTCTTCTCTCCTCTCAGGCAGGCTGGATCAACTGCTCAG
Seq C2 exon
CACCCTGCAGAGGCCCCTGGAAAGCCTAGAGCTGGCCTTCTGTGCACTGTTGCCTGAGGACCTACGCTTCCTGGCTCAGAGCTCTCATGCTGCCCACCTCAAAAAGCTGGACTTGAGTGGCAATGACTTGTCAGGCAACCAGCTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCAGCCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGATTGCTGATGCCCAGTTGTTGGCCACACTGCCCACCCTGACTCGCTGTGCCAGTCTCCGATACCTTGGTCTCTATGGCAACCCTTTGTCTATGGCAGGACTTAAAGAGCTGCTTCGGGACTCTGTGATTCAGGCTGAGCTACGTACTGTGGTGCACCCTTTCCCTGTGGACTGCTATGAGGGTCTTCCTTGGCCGCCACCTGCCTCTGTCCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTGCCCGTGTAGAAGCTGAGTTACACCAGCTGCTGTTAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016128-'9-16,'9-13,10-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127992=LRR_4=WD(100=26.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCAAGGTGGCCTTCAT
R:
CATTGCCACTCAAGTCCAGCT
Band lengths:
356-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]