BtaEX6061706 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015374 | COL22A1
Description
collagen, type XXII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22989]
Coordinates
chr14:5295879-5308577:+
Coord C1 exon
chr14:5295879-5295914
Coord A exon
chr14:5296789-5296842
Coord C2 exon
chr14:5308464-5308577
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATGTCTTCTTTCTCTTCAGGGA
3' ss Score
11.63
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGCCCCTCTGGACCACCAGGAGAAAAAGGTCCTCCG
Seq A exon
GGATCTCGAGGCCCGCCTGGGTTTCCCGGCCCCCAGGGACCAGCTGGCCAGGAT
Seq C2 exon
GACGTGTGCAATGACTGTCCCCCGGGTCCCCCAGGCCTCCCTGGTCTTCCAGGTTTTAAAGGGGACAAAGGTCTCCCAGGAAAGCCAGGGAGAGAAGGCACAGAAGGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015374-'64-67,'64-64,66-67=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.3=100)
A:
PF0139113=Collagen=FE(29.8=100)
C2:
PF0139113=Collagen=PD(2.2=5.3),PF0139113=Collagen=PU(56.7=89.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCACCAGGAGAAAAAGG
R:
TCCCTTCTGTGCCTTCTCTCC
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]