RnoEX6032554 @ rn6
Exon Skipping
Gene
ENSRNOG00000024824 | Col22a1
Description
collagen type XXII alpha 1 chain [Source:RGD Symbol;Acc:1309081]
Coordinates
chr7:113082486-113085408:-
Coord C1 exon
chr7:113085373-113085408
Coord A exon
chr7:113083618-113083671
Coord C2 exon
chr7:113082486-113082530
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTATCTTTCTTTTTCATCAGGGA
3' ss Score
10.4
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGCCCCTCAGGACAACCAGGAGATAAAGGACCCCCG
Seq A exon
GGATCTCGAGGCTTACCTGGATTCCCCGGCCCACAAGGACCAGCTGGCCAGGAT
Seq C2 exon
GGTACACCAGGAAATCCAGGAGAAAGAGGGCCTCCTGGAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024824-'54-52,'54-51,56-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.3=100)
A:
PF0139113=Collagen=FE(29.8=100)
C2:
PF0139113=Collagen=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAGGACAACCAGGAGAT
R:
GTTTTCCAGGAGGCCCTCTTT
Band lengths:
76-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]