GgaEX1016543 @ galGal4
Exon Skipping
Gene
ENSGALG00000016195 | COL22A1
Description
collagen, type XXII, alpha 1 precursor [Source:RefSeq peptide;Acc:NP_001132911]
Coordinates
chr2:144174938-144232576:-
Coord C1 exon
chr2:144232523-144232576
Coord A exon
chr2:144182673-144182726
Coord C2 exon
chr2:144174938-144174982
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTCTCTCCCTGCCAGGGT
3' ss Score
9.69
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGAGAGACTGGTCCAGAGGGCAAGCCTGGGGTCCCAGGTTTACCAGGTCAAAGG
Seq A exon
GGTCCTCGTGGTGTACCTGGTATCCCTGGACCACAGGGGCCTCCTGGCCAGGAT
Seq C2 exon
GGTCTACCTGGAAATCCAGGGGAAAGAGGACCTCCTGGAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016195_MULTIEX3-20/22=C1-21
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=PU(10.8=50.0)
A:
PF0139113=Collagen=FE(29.8=100)
C2:
PF0139113=Collagen=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGACTGGTCCAGAGGG
R:
TTCCAGGAGGTCCTCTTTCCC
Band lengths:
94-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]