MmuEX0012226 @ mm9
Exon Skipping
Gene
ENSMUSG00000079022 | Col22a1
Description
collagen, type XXII, alpha 1 [Source:MGI Symbol;Acc:MGI:1916950]
Coordinates
chr15:71699391-71702270:-
Coord C1 exon
chr15:71702235-71702270
Coord A exon
chr15:71700541-71700594
Coord C2 exon
chr15:71699391-71699435
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTCTTTTTCATCAGGGA
3' ss Score
11.14
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGTCCCTCAGGACGACCAGGAGATAAAGGACCCCCG
Seq A exon
GGATCTCGAGGCTTACCTGGATTCCCCGGCCCCCAGGGACCAGCTGGCCAGGAT
Seq C2 exon
GGTGCACCAGGAAACCCAGGAGAAAGAGGGCCTCCTGGAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079022_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.3=100)
A:
PF0139113=Collagen=FE(29.8=100)
C2:
PF0139113=Collagen=FE(24.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGACGACCAGGAGATA
R:
GGTTTTCCAGGAGGCCCTCTT
Band lengths:
76-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: