BtaEX6063491 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83936667-83942084:+
Coord C1 exon
chr14:83936667-83936786
Coord A exon
chr14:83938741-83938905
Coord C2 exon
chr14:83941923-83942084
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTGTTTTATCCTAGGTC
3' ss Score
10.83
5' ss Seq
TAGGTACGT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GCCTGGCTCAGTACAGTGGTGACCCCAGAATTGAATGGCACTTGAATGCCTTTAACACCAAAGACGAGGTGATCGACGCTGTCCGCAATCTACCATACAAGGGGGGAAATACTCTCACAG
Seq A exon
GTCTTGCTTTGAATTACATTTTTGAAAACAGTTTTAAACCGGAAGCGGGAGCAAGGACTGGAGTGTCCAAAATTGGCATTTTAATCACAGACGGAAAGTCCCAAGATGATATCATTCCACCATCCAGAAACCTTCGTGAATCTGGTGTAGAGCTGTTTGCCATAG
Seq C2 exon
GGGTGAAAAACGCGGACGAGAAGGAGCTGCAGGAGATCGCCTCCGAGCCGGACAGCACGCACGTGTACAACGTGGCCGAGTTTGACCTGATGCACACGGTTGTGGAGAGCCTCACGAGGACCGTGTGCTCCAGGGTGGAGGAGCAGGACCGCGAGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'7-15,'7-14,8-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.176
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(23.1=100)
A:
PF0009223=VWA=FE(31.8=100)
C2:
PF0009223=VWA=PD(21.4=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGGTGACCCCAGAATTG
R:
GTCCTGCTCCTCCACCCTG
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]