GgaEX1065994 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136403117-136404836:+
Coord C1 exon
chr2:136403117-136403236
Coord A exon
chr2:136404107-136404271
Coord C2 exon
chr2:136404675-136404836
Length
165 bp
Sequences
Splice sites
3' ss Seq
AAAATGTTTCTTCTTTTCAGGTC
3' ss Score
11.05
5' ss Seq
TTGGTGTGT
5' ss Score
3.29
Exon sequences
Seq C1 exon
GTCTTGCACAGTACAGTGGTGATCCCCGAATTGAATGGCATTTGAATGCCTATGGCACAAAAGATGCTGTCTTGGATGCAGTCCGTAATCTACCATATAAAGGAGGGAATACGCTAACAG
Seq A exon
GTCTTGCGTTAACTTACATTTTGGAGAACAGCTTTAAGCCTGAAGCTGGTGCAAGGCCTGGGGTATCTAAAATCGGTATATTGATCACCGATGGGAAATCCCAAGATGATGTTATCCCTCCTGCTAAAAACCTACGGGATGCAGGCATTGAGCTGTTTGCTATTG
Seq C2 exon
GTGTGAAGAATGCAGATATAAATGAACTCAAAGAAATTGCCTCTGAACCTGACAGTACACACGTTTACAATGTTGCTGACTTCAACTTCATGAATTCTATTGTCGAAGGGCTTACCAGAACAGTGTGTTCACGAGTAGAGGAACAGGAAAAGGAAATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'13-18,'13-17,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.036
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(23.1=100)
A:
PF0009223=VWA=FE(31.8=100)
C2:
PF0009223=VWA=PD(21.4=67.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTACAGTGGTGATCCC
R:
ACACACTGTTCTGGTAAGCCC
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]