DreEX0022962 @ danRer10
Exon Skipping
Gene
ENSDARG00000005762 | col14a1a
Description
collagen, type XIV, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9889]
Coordinates
chr16:14820282-14911550:+
Coord C1 exon
chr16:14820282-14820403
Coord A exon
chr16:14910178-14910342
Coord C2 exon
chr16:14911389-14911550
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTTATCTGTTTAGGTC
3' ss Score
10.43
5' ss Seq
TTGGTATTA
5' ss Score
0.6
Exon sequences
Seq C1 exon
GTGCGGGGCAAGCATCACTCACTTGGCTGTAAGGATGCAGGTGTCGGGATCCAGGATTAAGCTGTGGTGTCCGCTTATCTCGCTGGCACTGATTCAGTTTCTTGCCCCTGTTTCAGCTCAAG
Seq A exon
GTCTCGCTCTTACATACGTACTGGAGAACAGCTTCAAACCTGAATCAGGTGCTCGTGACAACATTCCCAAAATTGGTATCCTGATAACTGACGGCAAATCGCAGGATGACGTTATCTCTCCTGCTCAAACCCTGAGAAGTTCTGGAGTGGAGCTGTTTGCCATTG
Seq C2 exon
GTGTGAAGAATGCTGATGAAAATGAGCTGAAGGCCATTGCGTCTGAACCAGAGGACACACATGTTTATAATGTGGCTGACTTCAGTATTATGGGCACCATAGTGGAAGGTTTGACCAGGACGGTGTGTGATGGAGTGGAGCAACAGGACAAAGAAATTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005762_MULTIEX1-6/25=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.273
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(19.2=33.3)
A:
PF0009223=VWA=FE(31.8=100)
C2:
PF0009223=VWA=PD(21.4=67.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTAAGGATGCAGGTGTC
R:
CCTGTTGCTCCACTCCATCAC
Band lengths:
245-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]