BtaEX6063658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020120 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr13:7585914-7589792:-
Coord C1 exon
chr13:7589705-7589792
Coord A exon
chr13:7587208-7587356
Coord C2 exon
chr13:7585914-7586085
Length
149 bp
Sequences
Splice sites
3' ss Seq
AAATGATTTTAATTTTTCAGCTG
3' ss Score
7.07
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AATTATGCAGAAGCGCTTAAGTACTTTCAGAAAGCTGCAGAGAAGGGATGGCCCAATGCACAGTTTCAGCTAGGCTTCATGTACTACT
Seq A exon
CTGGCTCTGGAGTATGGAAGGATTATAAACTTGCCTTCAAATATTTTTACTTGGCATCTCAGAGTGGGCAGCCCCTAGCCATTTATTACCTGGCTGAGATGTACGCCACAGGAACAGGAGTGTTGCGATCATGCAGAACTGCTGTGGAG
Seq C2 exon
ACACAGCTTTATAAAGGTGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTGACAGCATACTTTGCTTATAAGAATGGTGATATAGATTCTTCTCTTGTTCAGTACGCACTGCTCGCAGAAATGGGGTATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020120-'15-16,'15-15,16-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
A:
PF082387=Sel1=PD(63.9=46.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGCGCTTAAGTACTTTCA
R:
TGAATGCTGAATTGCTTTGAGCT
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]