GgaEX1051573 @ galGal3
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
NA
Coordinates
chr5:43387307-43388544:-
Coord C1 exon
chr5:43388457-43388544
Coord A exon
chr5:43388056-43388204
Coord C2 exon
chr5:43387307-43387472
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGACTTAATATTTCTTTTAGATG
3' ss Score
7.89
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AACTATGAGCTAGCTCTGAAGTATTTCCAGAAGGCTGCAGAACAGGGATGGGTTGATGGACAACTTCAGCTGGGTTCCATGTATTACA
Seq A exon
ATGGTATTGGAGTCAAGAGAGACTATAAACAAGCTTTGAAATATTTTAATTTGGCCTCCCAGGGTGGCCATATTCTGGCTTTTTATAATCTGGCTCAGATGCATGCTACTGGCACTGGAGTGATGCGTTCTTGTCATACTGCTGTTGAG
Seq C2 exon
TTGTTTAAGAATGTTTGTGAACGTGGACGCTGGTCTGAAAGACTTATGACTGCCTACAACAGCTATAAAGATGGCGATTCAAATTCTGCTGTTGTTCAGTATCTTCTTTTGGCAGAACAAGGCTATGAAGTTGCACAAAGCAATGCTGCTTTCATACTTGATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-'20-21,'20-19,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
A:
PF082387=Sel1=PD(63.9=46.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGAAGTATTTCCAGAAGGC
R:
TTGATCAAGTATGAAAGCAGCATTGC
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]