RnoEX6029503 @ rn6
Exon Skipping
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115581489-115583005:-
Coord C1 exon
chr6:115582918-115583005
Coord A exon
chr6:115582467-115582615
Coord C2 exon
chr6:115581489-115581654
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTGTTTTGCTTGCAGATG
3' ss Score
11.54
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AATTATGACCTGGCACTCAAGTATTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGGGCAGCTGCAGCTTGGCTCTATGTACTACA
Seq A exon
ATGGCATTGGAGTCAAGAGAGATTATAAACAGGCCTTGAAGTATTTTAATTTAGCTTCTCAGGGAGGCCATATCTTGGCTTTCTATAACCTAGCACAGATGCACGCCAGCGGCACAGGGGTGATGAGATCCTGCCACACTGCAGTGGAG
Seq C2 exon
TTGTTTAAGAACGTGTGTGAGCGTGGTCGCTGGTCAGAGAGGCTGATGACCGCCTACAACAGCTATAAAGACGACGACTACAACGCCGCTGTGGTCCAGTACCTCCTGCTGGCGGAGCAGGGCTACGAGGTGGCGCAGAGCAACGCAGCCTTCATCCTCGACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-'28-25,'28-23,30-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
A:
PF082387=Sel1=PD(63.9=46.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCACTCAAGTATTTCCA
R:
TCTGGTCGAGGATGAAGGCTG
Band lengths:
247-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]