BtaEX6063985 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015910 | ITGB1
Description
Bos taurus integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (ITGB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174368]
Coordinates
chr13:20279474-20281735:+
Coord C1 exon
chr13:20279474-20279673
Coord A exon
chr13:20281060-20281298
Coord C2 exon
chr13:20281513-20281735
Length
239 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGATTCTTTGTTCAGGTG
3' ss Score
7.2
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTTCAGTTTGAAATTAGCATAACTGCAAATAAATGTCCAAATAAGAACTCTGAAACCATTAAAATTAAGCCTCTGGGCTTCACTGAGGAAGTGGAGATTATCCTTCAGTTCATCTGTGAATGTGAGTGCCAGGGTGAAGGCATCCCAGGAAGCCCCAAGTGCCACGACGGCAACGGGACCTTCGAGTGTGGGGCCTGCAG
Seq A exon
GTGCAACGAGGGACGTGTCGGGAGACACTGTGAATGTAGCACAGATGAGGTGAACAGCGAAGACATGGATGCCTACTGCAGGAAAGAAAACAGTTCAGAAATCTGTAGCAACAATGGAGAGTGTGTCTGTGGACAGTGTGTGTGTAGGAAGAGGGACAATACAAATGAAATTTATTCTGGCAAATTCTGCGAGTGTGATAATTTCAACTGTGATAGATCCAATGGCTTAATATGTGGAG
Seq C2 exon
GAAATGGTGTTTGCAAGTGTCGAGTGTGTGAGTGCAACCCTAACTACACCGGCAGCGCCTGTGACTGTTCTCTGGATACCACTTCCTGCATGGCCGTGAATGGACAGATCTGCAATGGCCGCGGCGTCTGCGAGTGTGGTGCCTGTAAGTGTACAGACCCCAAGTTCCAAGGGCCAACCTGTGAGATGTGTCAGACCTGCCTTGGAGTCTGTGCTGAGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015910-'31-27,'31-25,34-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.3=59.7)
A:
PF079748=EGF_2=WD(100=46.9),PF079748=EGF_2=PU(32.3=12.3)
C2:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.5=5.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAATGTGAGTGCCAGGG
R:
CCAAGGCAGGTCTGACACATC
Band lengths:
292-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]