GgaEX6018538 @ galGal4
Exon Skipping
Gene
ENSGALG00000007145 | ITGB1
Description
integrin beta-1 precursor [Source:RefSeq peptide;Acc:NP_001034343]
Coordinates
chr2:14002215-14006080:+
Coord C1 exon
chr2:14002215-14002417
Coord A exon
chr2:14004212-14004450
Coord C2 exon
chr2:14005858-14006080
Length
239 bp
Sequences
Splice sites
3' ss Seq
GTCATGTTCTTACCTTGCAGATG
3' ss Score
11.58
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTTAGGTTTGAGATTAACGTAACAGCAAATGAATGTCCAAAGAAAGGGCAAAATGAAACAATTAAAATTAAACCACTGGGGTTCACTGAAGAAGTGGAAATTCATCTCCAGTTCATCTGTGACTGTCTGTGTCAAAGCGAAGGAGAACCTAACAGCCCTGCCTGCCACGACGGAAATGGGACATTTGAATGTGGTGCATGCAG
Seq A exon
ATGTAATGAAGGACGTATCGGAAGACTTTGTGAATGTAGTACAGATGAAGTAAATAGTGAGGATATGGATGCTTACTGCAGAAGGGAGAACAGTACAGAAATATGCAGCAACAATGGAGAGTGCATTTGCGGACAGTGCGTATGCAAGAAAAGAGAAAACACCAACGAAGTGTATTCTGGCAAATATTGTGAATGTGATAACTTCAACTGCGATCGATCAAACGGTTTGATTTGTGGAG
Seq C2 exon
GAAATGGTATCTGCAAATGCAGAGTGTGTGAGTGTTTCCCCAACTTCACCGGCAGTGCTTGCGATTGTTCTTTGGATACCACTCCATGCATGGCAGGGAACGGACAGATATGCAACGGAAGAGGAACTTGTGAATGTGGCACTTGTAATTGCACAGATCCCAAATTCCAAGGCCCCACATGTGAGATGTGTCAGACTTGCCTTGGTGTCTGTGCAGAGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007145-'20-25,'20-23,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.5=60.3)
A:
PF079748=EGF_2=WD(100=46.9),PF079748=EGF_2=PU(32.3=12.3)
C2:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.5=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGTCTGTGTCAAAGCGA
R:
ACACCAAGGCAAGTCTGACAC
Band lengths:
293-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]