BtaEX6063986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015910 | ITGB1
Description
Bos taurus integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (ITGB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174368]
Coordinates
chr13:20279163-20281298:+
Coord C1 exon
chr13:20279163-20279303
Coord A exon
chr13:20279474-20279673
Coord C2 exon
chr13:20281060-20281298
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGTTTTCCTTTTAAGGTT
3' ss Score
12.5
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCCCTTTCTTCAGAAGTCATTTTGGAAAACAGCAAATTGCCGGAAGGAGTAACAATAAATTACAAGTCTTACTGCAAGAATGGGGTGAATGGAACAGGGGAAAATGGGAGAAAATGCTCTAATATTTCCATTGGGGATGAG
Seq A exon
GTTCAGTTTGAAATTAGCATAACTGCAAATAAATGTCCAAATAAGAACTCTGAAACCATTAAAATTAAGCCTCTGGGCTTCACTGAGGAAGTGGAGATTATCCTTCAGTTCATCTGTGAATGTGAGTGCCAGGGTGAAGGCATCCCAGGAAGCCCCAAGTGCCACGACGGCAACGGGACCTTCGAGTGTGGGGCCTGCAG
Seq C2 exon
GTGCAACGAGGGACGTGTCGGGAGACACTGTGAATGTAGCACAGATGAGGTGAACAGCGAAGACATGGATGCCTACTGCAGGAAAGAAAACAGTTCAGAAATCTGTAGCAACAATGGAGAGTGTGTCTGTGGACAGTGTGTGTGTAGGAAGAGGGACAATACAAATGAAATTTATTCTGGCAAATTCTGCGAGTGTGATAATTTCAACTGTGATAGATCCAATGGCTTAATATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015910-'30-25,'30-22,31-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(10.7=100)
A:
PF0036213=Integrin_beta=PD(9.3=59.7)
C2:
PF079748=EGF_2=WD(100=46.9),PF079748=EGF_2=PU(32.3=12.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGAATGGGGTGAATGGA
R:
AGCCATTGGATCTATCACAGTTGA
Band lengths:
296-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]