DreEX6093680 @ danRer10
Exon Skipping
Gene
ENSDARG00000071863 | itgb1a
Description
integrin, beta 1a [Source:ZFIN;Acc:ZDB-GENE-060803-2]
Coordinates
chr24:1126414-1128508:-
Coord C1 exon
chr24:1128368-1128508
Coord A exon
chr24:1127987-1128189
Coord C2 exon
chr24:1126414-1126652
Length
203 bp
Sequences
Splice sites
3' ss Seq
GTTTTGATTTATATCTCCAGGTG
3' ss Score
9.83
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TCTCTTTCCTCAGAGGTGATCCTGGAGAACAGTAAGCTTCCTGAAGGAGTGACCATCACATATCAGTCGCGCTGTAAGAACGGTGTGGTCAACGAAGGAGAGAGTGGAAGGAAATGCTCCAACATCTCAATCGGAGACGAG
Seq A exon
GTGTCGTTCAACATTAACATCACGGCTCAAGGCTGCCCTAAACAAGGCAAGACAGAGACCATAAAGATCAAGCCGCTGGGCTTCACTGAGGAGGTGGAGATAACACTGAGCTTCATCTGCGAATGCGAATGCCACAAACACGCCATGAAGAACAGCCCGCTGTGCCACAACGGCAATGGCTCCTTTGAGTGCGGAGCCTGCAG
Seq C2 exon
GTGTAATAAGGGTCGTGTGGGTCGTCAGTGTGAGTGCCGGAAGGATGAAGTGTCCACCGAGGATCTGGACAAGAACTGCCGCAAAGACAACGGCACCGACATCTGCAGCAACAACGGCGAGTGTGTGTGCGGGACCTGCGAATGCAAGAAGCGGGAGAATCCAGAGGAGCGATACAGCGGGAAATACTGCGAGTGCGACAACTTCAACTGCGACCGCTCCAACAACAAACTCTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071863-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(10.7=100)
A:
PF0036213=Integrin_beta=PD(9.5=60.3)
C2:
PF079748=EGF_2=WD(100=46.9),PF079748=EGF_2=PU(32.3=12.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCACATATCAGTCGCGC
R:
GAAGTTGTCGCACTCGCAGTA
Band lengths:
295-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]