RnoEX0045174 @ rn6
Exon Skipping
Gene
ENSRNOG00000010966 | Itgb1
Description
integrin subunit beta 1 [Source:RGD Symbol;Acc:2927]
Coordinates
chr19:61712350-61714640:+
Coord C1 exon
chr19:61712350-61712490
Coord A exon
chr19:61712642-61712841
Coord C2 exon
chr19:61714402-61714640
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTAATCTTTTTTCCTTTAAGGTT
3' ss Score
11.61
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TCCCTTTCTTCAGAAGTCATTCTGGAAAACAGCAAATTGCCAGATGGAGTAACAATAAATTACAAGTCCTACTGCAAGAATGGAGTGAATGGGACAGGAGAAAATGGACGAAAGTGCTCTAACATTTCCATTGGAGATGAG
Seq A exon
GTTCAATTTGAAATTAGCATAACTGCTAATAAATGTCCAAACAAGGAGTCTGAAACAATTAAAATTAAACCTCTGGGCTTCACAGAAGAAGTAGAGGTGGTCCTTCAGTTCATCTGTAAGTGTAATTGTCAAAGCCATGGCATCCCAGCAAGTCCCAAGTGCCATGAGGGAAATGGGACATTTGAGTGTGGAGCCTGCAG
Seq C2 exon
GTGCAATGAGGGTCGTGTTGGGAGACACTGTGAATGTAGCACAGATGAAGTGAACAGTGAAGACATGGATGCTTACTGCAGAAAAGAGAACAGCTCAGAGATCTGCAGTAACAATGGAGAGTGTGTCTGTGGACAGTGTGTGTGCAGGAAGAGAGAGAATACAAATGAAATTTACTCCGGCAAATTCTGCGAGTGTGATAACTTCAACTGCGATAGGTCCAACGGCTTAATCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010966-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(10.7=100)
A:
PF0036213=Integrin_beta=PD(9.3=59.7)
C2:
PF079748=EGF_2=WD(100=46.9),PF079748=EGF_2=PU(32.3=12.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGAATGGAGTGAATGGGA
R:
CCGTTGGACCTATCGCAGTTG
Band lengths:
294-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]