BtaEX6064035 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23226838-23228034:+
Coord C1 exon
chr13:23226838-23227026
Coord A exon
chr13:23227446-23227534
Coord C2 exon
chr13:23227673-23228034
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTTTTCTTTTCTAGCTC
3' ss Score
11.84
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTTAGGGATGCTGAAGTCATTACATCAACTTCAAGTAGAAAATCGAAGATTAGAGGAACAGATTAAAAACTTGACTGCCAAAAAGGAACGCCTTCAATTATTGAATGCACAGCTCTCAGTGCCTTTTCCAACAATAACAGCAAACCCCAGCCCATCTCATCAAATGCATGCATTTCCAGCACAGAATG
Seq A exon
CTCCTACTACTGATTCCTTGAACAGCAGTAAGAGCCCTCATCTAGGAAACAGCTTTTTACCTGATAATTCTCTTCCTGTATTAAATCAG
Seq C2 exon
GACTTAACCTCCAGCGGACAAAGCACCAGCAGCTCATCGGCTCTTTCTACTCCACCTCCTGCCGGGCAGAGTCCAGCTCAGCAGGGCTCAGGCGTTAGCGGAGTTCAGCAGGTCAATGGTGTGACAGTGGGGGCACTGGCTAGTGGAATGCCGACTGTAACATCCACCATTCCTGCCGTGCCTGGAGTGGGTGGAATAATTGGAGCTTTGCCAGGTAACCAACTGGCAATTAATGGCATTGTAGGAGCTTTAAATGGGGTTATTCAGACCCCTGTCACAATATCCCAGAACCCTACCCCCCTCACCCACACAACTGTACCACCTAATGCAACACATCCAATGCCAGCTACACTGACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074-'58-54,'58-53,59-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=0.967 C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAACAGCAAACCCCAGCCC
R:
GACCTGCTGAACTCCGCTAAC
Band lengths:
170-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]