RnoEX0054838 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84972068-84973209:+
Coord C1 exon
chr17:84972068-84972256
Coord A exon
chr17:84972618-84972706
Coord C2 exon
chr17:84972845-84973209
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTATCTTTTCCTGTTTCTAGCTC
3' ss Score
9.82
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
TTTTAGGAATGTTAAAGTCATTACATCAACTTCAAGTTGAAAATCGAAGATTAGAAGAACAGATTAAAAACTTGACTGCCAAAAAAGAACGTCTTCAGTTGTTGAACGCACAGCTTTCAGTGCCTTTCCCAGCAATAACGACAAACCCTAGTCCATCTCATCAGATACACACATACACAGCACAGACTG
Seq A exon
CTCCTACTACTGACTCTCTGAACAGCAGTAAGAGCCCGCATATAGGAAACAGCTTTGTACCCGACAATTCTCTTCCTGTATTAAATCAG
Seq C2 exon
GACCTGACTTCCAGTGGGCAAAGCACCAGCAGCTCTTCTGCTCTTTCCACTCCCCCGCCTGCTGGGCAGAGTCCAGCCCAGCAGGGCTCTGGAGTTAGTGGGGTTCAGCAGGTGAACGGCGTGACAGTGGGGCCACTAGCTAGTGGAATGCAGACTGTCACATCCACCATTCCTGCTGTGTCTGCAGTGGGTGGAATAATTGGAGCTTTGCCAGGTAACCAGCTGGCAATCAATGGCATTGTAGGAGCGTTAAATGGTGTTATTCAGACGCCGGTCACAATATCCCAGAACCCTGCCCCGCTCACCCACACCAGTGTGCCACCTAATGCAGCACATCCCATGCCAGCCGCCGCCCTGACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249-'42-46,'42-45,43-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.933 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCAGTGCCTTTCCCAGCA
R:
AACCCCACTAACTCCAGAGCC
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]