GgaEX1036487 @ galGal4
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17812348-17813517:-
Coord C1 exon
chr2:17813329-17813517
Coord A exon
chr2:17812835-17812923
Coord C2 exon
chr2:17812348-17812709
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTTGCAATAATTGCATTAGCAC
3' ss Score
0.83
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTTAGGAATGCTTAAATCATTGCACCAACTTCAGGTTGAAAACAGGAGGTTGGAAGAGCAGATCAAGAATCTGACTGCTAAAAAGGAACGGCTTCAGCTTCTCAATGCACAGCTTTCGGTGCCCTTTCCAACACTGACTTCAAATCCCAGCCCTTCTCATCAAGTACATGCCTTTCCTGTGCAAGCAG
Seq A exon
CACCTAGCACGGATTCCTTGAACAGCAGTAAAAGCCCTCATCTGGGAAACAGTTTTTTACCGGACAATTCTCTTCCCGTGTTAAATCAG
Seq C2 exon
GAGATAACCTCCAGCGGACAAAGCACCAGCAGTTCATCAGCTCTTTCCACTCCACCACCTGCTGGGCAGAGTCCAGCTCAGCAAGGCTCAGGAGTCACGGGAGTTCAACAGGTCAATGGTGTGACAGTGGGGGCACTAGCTAGTGGTATGCAGACTGTAACCTCCACCATTCCTGCAGTGCCTGGTGTGGGTGGAATAATTGGAGCGCTGCCAGCCAGCCAGCTGGCAATCAATGGAATTGTAGGGGCTTTAAATGGGGTAATTCAGACCCCAGCAACAATATCACAGAACCCTTCTCCTCTCACTCATGCAACCGTGCCACCCAATGCAACGCATCCTCTGCCAACTACATTAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.933 C2=0.587
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000012873fB9453
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTTTCCAACACTGACT
R:
TGTTGAACTCCCGTGACTCCT
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]