BtaEX6064591 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004620 | ZNF133
Description
Bos taurus zinc finger protein 133 (ZNF133), mRNA. [Source:RefSeq mRNA;Acc:NM_001110090]
Coordinates
chr13:38717152-38722805:+
Coord C1 exon
chr13:38717152-38717278
Coord A exon
chr13:38717678-38717773
Coord C2 exon
chr13:38720924-38722805
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTCCTCTGAGCAGGCA
3' ss Score
8.25
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCACACATGGCATTCAGAGATGTGGCTGTGGATTTCACCCAGGATGAGTGGGTGCTGCTGAGCCCAGCTCAGAGGTCCCTGTACCGGGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
Seq A exon
GCATTCCGTTTTCTAAACCAGAACTCATCACCCAGCTGGAGCAAGGGAAGGAGACCTGGAGAGAAGAGAGGAAATGCTCGCCCGTCAGCTGCCTGG
Seq C2 exon
AACCAAAGCCAGAACTCCACCTCTGTCCTTTCTGCCCTCCGGATCTCTGCAGTCAGAAATTCCACATGCAGCAGGTGCTGTGTAGTCCCCCACCCTGGATCTTCACGTGCCTGTATGCCGAAGATCCCGTCCAGCCAGGAGACCTGTGCCTGGAGGACCAGCAGCAGCAGGCCGCTGGTGGTAGTGCCTGGATCGAGGAAGTGGAAGGGCAGGAGGGAGAAGGTGCCCGGCCTTTGTTTGGAAAGACAGAGAAAAGTACTGTAGAAGCATTCCCCAGGCCACCCCAGAGGCAGCCAGTCATCTCTGGGGGTGGGGTCCCAGGTATGGAGATAGAGGCCGGCCCTGCACAAATGGGGACCCCTGAGGAAACAGACAGGCTGTTGAAGAGGATCGAAGTCCTGGGGTTTGGGACTGTCAACTGTGGAGAGTGTGGACTGGGTTTCAGCAAGATGACGAACCTGCTCAGTCACCAGAGGATCCACTCCGGGGAGAAGCCCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004620-'7-12,'7-8,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.192
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0009621=zf-C2H2=WD(100=4.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCAGAGATGTGGCTGT
R:
TCTGACTGCAGAGATCCGGAG
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]