RnoEX0101041 @ rn6

Exon Skipping

Gene

ENSRNOG00000027955 | Zfp133

Description

zinc finger protein 133 [Source:RGD Symbol;Acc:1566283]

Coordinates

chr3:138609099-138616131:+

Coord C1 exon

chr3:138609099-138609225

Coord A exon

chr3:138610573-138610668

Coord C2 exon

chr3:138614262-138616131

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTTTCTTTTCTGCTGAGCAGGAA

3' ss Score

6.84

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GTACACATGGCATTCAGAGATGTGGCTGTGGATTTCTCCCAGGAGGAGTGGAGCCTGCTGAGCCCTGCTCAGCGGTCCCTGTACAGAGAGGTGATGTTGGAGAACTACAGCAACCTGGTCTCTCTGG

Seq A exon

GAATTCCATTTTCAAAACCAAAGCTCATCACCCAGCTAGAGCAAGGGAAAGAGACATGGCGAGAGGAGAGAAAATGTCCACAGGTTGCTTGTCCAG

Seq C2 exon

CACAGGCAAAGCTGGAACTCTGCCCTGGTCATGTGTGCCCTCCAGATCTTACCAATCAGAAATCCCCTGTGCAGCACGTGCTAAGTCATCATGCCCCATTGATATTTACATGCCTGTGTGCGGAAAGTCATGTTGACCGAGGGGACTCCTGTCAGGGGGCCCTGGAAAAGCAGCATCAAGCCTCTGATAAGAATTCCTGCAGAGATAAATCAGAAGGTGGAGAGAGAGAAAGCGCAAGGCCTTCATCTGGAAGGACAAAGAAAGGGAGTTTGGGAGCCCTCTCTAGGCCACCCCAAGGGCAGCCAGTCAACTCTCCCAATGGCATCAGATGGGTAGAGATGGAGACCAGCCCAGCTCAAGCCAGGAGCACTGAGGAACCAGAGAAGTTGCTGAAAGGAATAGAAATCTTGGAATTTGGAACGGTTAACTGTGAAGAGTGTGGGCTGGGCTTCAGCAAGATGACAAACCTGCTTAGTCACCAGAGGATCCACTCAGGAGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000027955-'5-8,'5-6,8-8

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.061 C2=0.250

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.3),PF0009621=zf-C2H2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=5.1)

Main Inclusion Isoform:

ENSRNOP00000038318