BtaEX6065036 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51859578-51861592:-
Coord C1 exon
chr13:51861541-51861592
Coord A exon
chr13:51859769-51859810
Coord C2 exon
chr13:51859578-51859614
Length
42 bp
Sequences
Splice sites
3' ss Seq
GGGACCCTTCTCTGTCCTAGGTT
3' ss Score
7.86
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTCTGTGCATGGACTCTCCCAGCCCTATGGACCCCAACATGGCAGAGCAGAC
Seq A exon
GTTTGAACAGGCCATCCAGGCAGCCAGCCGAGTTATTCAAAA
Seq C2 exon
TGAGCAGTTTGCCATCCGACGTTTCCAGTCCTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436-'2-4,'2-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.467 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(33.3=77.8)
A:
PF066178=M-inducer_phosp=FE(33.3=100)
C2:
PF066178=M-inducer_phosp=FE(28.6=100),PF066178=M-inducer_phosp=PU(0.1=0.0)
Main Skipping Isoform:
ENSBTAT00000011100fB1542
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCATGGACTCTCCCAG
R:
AAGGACTGGAAACGTCGGATG
Band lengths:
84-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]