DreEX0020129 @ danRer10
Exon Skipping
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14794910-14796220:-
Coord C1 exon
chr13:14796169-14796220
Coord A exon
chr13:14795048-14795089
Coord C2 exon
chr13:14794910-14794943
Length
42 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTATCTACACAGGTT
3' ss Score
9.39
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTCTTGGACTAGAGTGTCCCAGTCCTTTAGATTCTCTGGATGCTGAGCAGAA
Seq A exon
GTTTGAGAAGGCCATGCAGGACGCCACACGAGCCGTTAATGA
Seq C2 exon
AAAAATGCCCATCCGCAGGATACACTCTTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.817 C2=0.375
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(15.4=77.8)
A:
PF066178=M-inducer_phosp=FE(12.1=100)
C2:
PF066178=M-inducer_phosp=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTAGAGTGTCCCAGTCCTT
R:
TGGCAAAGAGTGTATCCTGCG
Band lengths:
80-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]