HsaEX6077034 @ hg19
Exon Skipping
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25 homolog B (S. pombe) [Source:HGNC Symbol;Acc:1726]
Coordinates
chr20:3779059-3781145:+
Coord C1 exon
chr20:3779059-3779110
Coord A exon
chr20:3780935-3780976
Coord C2 exon
chr20:3781109-3781145
Length
42 bp
Sequences
Splice sites
3' ss Seq
GGGACCCTTCTCTGTCCTAGGTT
3' ss Score
7.86
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTCTCTGCATGGATTCCCCCAGCCCTATGGACCCCCACATGGCGGAGCAGAC
Seq A exon
GTTTGAACAGGCCATCCAGGCAGCCAGCCGGATCATTCGAAA
Seq C2 exon
CGAGCAGTTTGCCATCAGACGCTTCCAGTCTATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224-'3-8,'3-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.433 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(33.3=77.8)
A:
PF066178=M-inducer_phosp=FE(33.3=100)
C2:
PF066178=M-inducer_phosp=FE(28.6=100),PF066178=M-inducer_phosp=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCATGGATTCCCCCAG
R:
GGCATAGACTGGAAGCGTCTG
Band lengths:
87-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)