BtaEX6065194 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011458 | CPXM
Description
Bos taurus carboxypeptidase X (M14 family), member 1 (CPXM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001015642]
Coordinates
chr13:52846197-52847246:+
Coord C1 exon
chr13:52846197-52846336
Coord A exon
chr13:52846442-52846532
Coord C2 exon
chr13:52847096-52847246
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGCCCACCTTTCCTGCCAGATA
3' ss Score
9.27
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
TCAGGCCTGGAAGATGGTGATCTTTTTGATGGGGCCTGGTGCGCCGAGCAGCAGGATGCCGAGCCATGGCTTCAGGTGGATGCTAGGCACCCCACCCGCTTCTCGGGCATTATCACACAGGGCAGGAACTCCATCTGGAG
Seq A exon
ATATGACTGGGTCACTTCATACAAAGTCCAGTTCAGCAATGACAGTCGGACCTGGTGGGGGAGTAAGAATCGCAGCAGCGGGATGGATGCG
Seq C2 exon
GTATTTCCTGCCAATTCAGATCCAGAGACACCAGTGCTAAATCTCCTGCCTGAGCCCCAGGTGGCCCGTTTCATTCGCCTGCTGCCCCAGACCTGGCTCCAGGGAGGTGCCTCTTGCCTCCGGGCAGAGATCCTGGCCTGCCCGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011458-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.065 C2=0.098
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(32.2=100)
A:
PF0075420=F5_F8_type_C=FE(21.0=100)
C2:
PF0075420=F5_F8_type_C=PD(30.1=84.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTTGATGGGGCCTGGTG
R:
GGCTCAGGCAGGAGATTTAGC
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]