RnoEX6019223 @ rn6
Exon Skipping
Gene
ENSRNOG00000021220 | Cpxm1
Description
carboxypeptidase X (M14 family), member 1 [Source:RGD Symbol;Acc:1306937]
Coordinates
chr3:122918066-122919113:-
Coord C1 exon
chr3:122918974-122919113
Coord A exon
chr3:122918783-122918870
Coord C2 exon
chr3:122918066-122918216
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTCTGTATCTCTACATGCAGGTA
3' ss Score
8.75
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TCAGGTCTGGAGGATGGTGACCTGTACGACGGGGCTTGGTGTGCCGAGCAACAAGATAATGAGCCTTGGCTTCAGGTGGACGCCAGGAGTCCTGCCCGCTTCTCAGGAATTGTTACGCAGGGCAGAAATTCTGTGTGGAG
Seq A exon
GTATGACTGGGTCACATCATTCAAGGTCCAGTTCAGCAATGACAGTCAGAGCTGGTGGATGAGTAGGAACAGTAGTGGGATGGACATG
Seq C2 exon
GTATTTCCTGCCAATTCAGACGCGGAGACCCCAGTGCTGAACCTTCTGCCAGAGCCTCAGGTGGCTCGATTCATTCGCCTGCTGCCTCAGACCTGGTTCCAGGGAGGTGCGCCTTGCCTCCGGGCAGAGATCCTGGCCTGTCCAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021220-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(32.4=100)
A:
PF0075420=F5_F8_type_C=FE(20.4=100)
C2:
PF0075420=F5_F8_type_C=PD(30.3=84.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGCCGAGCAACAAGATA
R:
AATGAATCGAGCCACCTGAGG
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]