MmuEX6105148 @ mm10
Exon Skipping
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130394922-130395968:-
Coord C1 exon
chr2:130395829-130395968
Coord A exon
chr2:130395636-130395723
Coord C2 exon
chr2:130394922-130395072
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTCTCTATCTCTGCGGCCAGGTA
3' ss Score
8.39
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TCAGGTCTGGAGGACGGTGACCTGTATGATGGCGCTTGGTGCGCTGAGCAACAAGACACTGAACCTTGGCTTCAGGTGGATGCAAAGAATCCCGTCCGCTTCGCAGGAATTGTTACACAGGGCAGAAACTCTGTGTGGAG
Seq A exon
GTATGACTGGGTCACATCATTCAAGGTCCAGTTCAGCAATGACAGCCAGACCTGGTGGAAGAGTAGGAACAGTACTGGAATGGACATA
Seq C2 exon
GTATTTCCTGCCAATTCAGACGCAGAGACCCCAGTGTTGAACCTTCTGCCAGAGCCTCAGGTGGCTCGATTCATTCGCCTGCTGCCTCAGACCTGGTTTCAGGGAGGTGCACCTTGCCTCCGGGCAGAGATCCTGGCCTGCCCAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(32.4=100)
A:
PF0075420=F5_F8_type_C=FE(20.4=100)
C2:
PF0075420=F5_F8_type_C=PD(30.3=84.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGACGGTGACCTGTAT
R:
GTTCAACACTGGGGTCTCTGC
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types