BtaEX6066253 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64909377-64910235:+
Coord C1 exon
chr13:64909377-64909726
Coord A exon
chr13:64909896-64910020
Coord C2 exon
chr13:64910120-64910235
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTGCCCTGTCCTTTCTGCAGAAG
3' ss Score
9.85
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
AAAGAAGCTGGCGCTGCGACTGCAGGAGGCAGAGGAGGGGGTTGAGGCCGCTCACGCCAAGTGCTCGTCGCTGGAGAAGGCCAAGCTGCGGCTGCAGACCGAGTCAGAGGACGTGACCCTGGAGCTGGAGCGGGCAACCTCTGCGGCCGCGGCGCTGGACAAGAAGCAGCGGCACTTGGAGCGGGCGCTGGAGGAGCGGCGGCGGCAGGAGGAGGAGATGCAGCGGGAGCTGGAGGCGGCCCAGAGGGAGGCCCGCAGCCTGGGCACTGAGCTCTTCCGGCTGCGGCACAGCCATGAGGAGGCCCTGGAGGCCCTGGAGACGCTCAGGCGGGAGAACAAGAACCTGCAGG
Seq A exon
AAGAGATCAGTGACCTCACAGACCAGGTCGGCCTCAGTGGGAAGAGCGTCCAGGAGCTGGAGAAAGCCAAGAAGGCGCTGGAAGGGGAGAAGAGCGAGCTCCAGGCAGCGCTGGAGGAGGCTGAG
Seq C2 exon
GGGGCCCTGGAGCTGGAGGAGACCAAAACCCTGCGGATCCAGCTGGAGCTTTCCCAGGTCAAGGCTGAGGTGGACCGGAAGCTGGCAGAGAAAGATGAAGAGTGTACTAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512-'44-44,'44-43,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=0.952 C2=0.410
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(33.9=78.8),PF045827=Reo_sigmaC=PU(74.3=88.1)
A:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(25.0=83.3)
C2:
PF0157614=Myosin_tail_1=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGAAGCAGCGGCACTT
R:
CTTGACCTGGGAAAGCTCCAG
Band lengths:
256-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]