DreEX6091856 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24951770-24953364:-
Coord C1 exon
chr11:24953015-24953364
Coord A exon
chr11:24952598-24952722
Coord C2 exon
chr11:24951770-24951885
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCGGTTCTAACAGAGG
3' ss Score
8.26
5' ss Seq
GAAGTATGG
5' ss Score
3.5
Exon sequences
Seq C1 exon
GAAGAAGTTGGCCACACGCCTCCAAGAGTCTGAGGAACAAGTTGAAGCCTCAAACGCCAAGTGTTCCTCATTAGAAAAGACCAAACATCGGCTGCAGTCTGAGATTGAGGATCTGGTATTAGATCTGGAGCGCTCGAACGCTGCCGCCACTGCACTGGACAAGAAGCAGAGGCAATTTGACAAGATTCTGGCTGAATGGAGGCATAAGTACGAGGAGTGCCAGTCTGAGCTGGAATCATCTCAGAAAGAGTCTCGTAATCTGAGCACGGAGCTGTTCAAACTCAAGAACTCATACGAGGAGGCTCTCGACCATCTGGAAAGCATCAAACGGGAGAGTAAAAATCTACAGG
Seq A exon
AGGAGATTTCCGACCTCAATGACCAGATTAGCCAGGGCGGCAAGACCATTCATGAGCTGGAGAAGATCAAGAAGGGCTTGGACTTGGAGAAGACGGAAATTCAAGCAGCTCTTGAGGAAGCTGAA
Seq C2 exon
GGCACTCTGGAGCATGAAGAGAGCAAGACTCTACGTATACAGCTGGAGCTCAACCAGATCAAAGCAGACACTGACCGGAAGCTGGCAGAGAAAGATGAGGAAATTGACAATCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'41-45,'41-44,42-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.619 C2=0.744
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100),PF045827=Reo_sigmaC=PU(71.7=83.9)
A:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(27.5=90.5)
C2:
PF0157614=Myosin_tail_1=FE(4.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTGGCTGAATGGAGGCA
R:
TTCCGGTCAGTGTCTGCTTTG
Band lengths:
247-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]