BtaEX6068019 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29064131-29068365:+
Coord C1 exon
chr16:29064131-29064346
Coord A exon
chr16:29067772-29068002
Coord C2 exon
chr16:29068244-29068365
Length
231 bp
Sequences
Splice sites
3' ss Seq
CTCTAATGATTTCTTTCCAGATC
3' ss Score
8.27
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACTCGATGGCAAGAAACAATTGATCAAATAGACAACAAGTTGGAAGGAATTTGGGGTGACATACTTATTTCAGCAGCATGCATTGTCTACAGTGGAGTGTTAACAGCAGAATTTCGCCAATTGATTGTGGAAAAGTGGCAGAATCTTTGTACTGAAAACAACATTTCTTTGTCTTCTAACTTTTCTTTAATTGAAGTCATGGCACAAAAACATGAG
Seq A exon
ATCCGCCAATGGCATCAACAGGGACTTCCTCTTGGTCAGTATTCAACAGAGAATGCCATCTTGATCAAGAATGGCCTGCAGTGGCCACTGCTGATTGACCCACATAAGCAAGCACACAACTGGATCCGTCAGATGGAAGGACCTCGGCTGCAGGAGCTCTCCACTGAGGATAGCAATTACATCCAAACAATTGAGAATGCCATGAAAACAGGAGGGAGTGTCCTCTTGCAG
Seq C2 exon
AATCTTCCTGAAAGATTACCTCCAAGTTTAAAGGAAATTTTGAAGAAGGATATCTACCAGAGAAGAGGACAATACTTCATAAAGATTAATGATTCTGAGATTGAATACAATTCTAAATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'20-21,'20-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(14.3=66.7),PF127812=AAA_9=PU(2.6=8.3)
A:
PF127812=AAA_9=FE(33.0=100)
C2:
PF127812=AAA_9=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGATGGCAAGAAACAATTGA
R:
TGAAGTATTGTCCTCTTCTCTGGT
Band lengths:
295-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]