MmuEX0014971 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181757192-181769674:+
Coord C1 exon
chr1:181757192-181757407
Coord A exon
chr1:181763246-181763476
Coord C2 exon
chr1:181769415-181769674
Length
231 bp
Sequences
Splice sites
3' ss Seq
TACTAGCATTTCTATTTCAGATT
3' ss Score
6.84
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCCGATGGCAAGAAACGATCAACGAGATAGACTGCAAGCTGAAAGGCGTCTGTGGTGACACATTCCTTTCATCCGCATGCCTCGCCTACATCGGAGTCTTAACGCCAGAGTTCCGAGAGCTGGTGATTCAGAAATGGAAAGACTTCTGCACTCGGGCAGAAATCATCTTGTCACCCAATTTTTCCTTAATTGACGTGATGGCAGAAAAAAATGAG
Seq A exon
ATTCGCCGGTGGCATAATCAAGGGCTGCCTCTTGGGCAGCATTTGGCAGAAAATGCCATTTTGATGAAAAGGACAAAGCAGTGGCCACTGGTGATCGACCCGCACAAGCAAGCACTCCACTGGATCCGCCAGATGGAAGGGCCCAGGCTGCAAGAGATTTCTGCTCAAGATAGCAATTACACCAAAAAACTGGTGATTGCCATGCAAGCAGGAGACCCTGTCCTCCTGCAG
Seq C2 exon
GAAGTGTGTTAGATGATGAAGAGATTGTAGAAACCCTGAGAAAATGCAAAATGACTTCAAATGAGATTTCCAAACGTATCAAAGAAACGGAAAAGGCGGAAAGCAAAATTCAAGCAACGCGCAAGAACTACCTCCCTATCGCCACTAGGGGCGCCCTGCTTTACTTCGTGGTGGCCGGCCTCTCGCATGTGGAGAAGATGTACCAGTTCTCCCTGGAGTGGCTCCGGGGGGTTTTTGTTTCCTTTACAGTTTCCAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
PF127772=MT=PD(14.6=68.1),PF127812=AAA_9=PU(2.6=8.3)
A:
PF127812=AAA_9=FE(33.0=100)
C2:
PF127812=AAA_9=PD(10.0=16.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACTGCAAGCTGAAAGGCG
R:
GCTTTCCGCCTTTTCCGTTTC
Band lengths:
292-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types