HsaEX6037001 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225333291-225346654:+
Coord C1 exon
chr1:225333291-225333506
Coord A exon
chr1:225337266-225337496
Coord C2 exon
chr1:225346456-225346654
Length
231 bp
Sequences
Splice sites
3' ss Seq
TACTAATAATTTCATTGCAGATC
3' ss Score
6.85
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACTCGATGGCAAGAAACAATCAATCAAATAGATAACAAATTAGAAGGAATTTTGGGTGACATACTTCTTTCAGCAGCGTGCATTGTCTACAGTGGAATTTTAACACCAGAATTTCGCCAGTTGATTGTGAATAAATGGGAGACATTCTGCATTGAAAATGGCATTTCTTTGTCTTCCAAATTCTCTTTAATTAAAGTTATGGCACAAAAATATGAG
Seq A exon
ATCAGCCGATGGCATAATCAGGGACTGCCTCATGGTCAGTATTCAGTAGAGAATGCCATCTTGATCAAGAATGGCCAGCAGTGGCCACTGCTGATTGACCCACATAGGCAAGCTCACAAATGGATCCGTCAGATGGAAGGATCCAGGCTGCAGAAGCTCTCCATTGAAGACAGCAATTATACCAAAAAAATTGAAAATGCTATGAAGACAGGAGGGAGTGTCCTCCTGCAG
Seq C2 exon
GTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-69/72=68-C2
Average complexity
C3
Mappability confidence:
98%=99=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(14.6=68.1),PF127812=AAA_9=PU(2.6=8.3)
A:
PF127772=MT=PD(3.7=14.1),PF127812=AAA_9=FE(33.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGAATTTCGCCAGTTGA
R:
AGTCTAGACTGGGATAATGCACT
Band lengths:
308-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains