BtaEX6068021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29046553-29054834:+
Coord C1 exon
chr16:29046553-29046712
Coord A exon
chr16:29054255-29054386
Coord C2 exon
chr16:29054739-29054834
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACATGAATTGTTCTCTCTAGGCT
3' ss Score
8.52
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AGTATATACACGGCCTCCTTACCTTGTACTGACTGTCATGAATGCAGTTTGTATTCTTCTGCAAAAGAAACCTAACTGGACTACAGCAAAGTTACTTCTTTCAGAAACTGGTTTCCTAAAAAAATTGATTAACATTGACAAGGACAGCATACCTGAGAAG
Seq A exon
GCTTTCATAAAACTGAAGAAGATTTTAGTCTTACCTGATTTCAACCCAAACAAGATTGCTCTCGTTTCTGTTGCTTGTTGCTCTATGTGCCAGTGGGTTATAGCCTTGAATAACTACCATGAAGCACAGAAG
Seq C2 exon
CTGGTGGGCCCTAAACAAATCCAAGTGGCTGAAGCTCAAAATGTCCTAAAAATAGCACAACAAAGGTTGGATGAGAAACAAAGAGGTTTACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.8=100)
A:
PF127772=MT=FE(12.8=100)
C2:
PF127772=MT=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACGGCCTCCTTACCTTGT
R:
AACCTCTTTGTTTCTCATCCAACCT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]