RnoEX6045674 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:100053749-100055540:+
Coord C1 exon
chr13:100053749-100053908
Coord A exon
chr13:100054961-100055092
Coord C2 exon
chr13:100055445-100055540
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATGTAACATGTTCTCCCCAGGTG
3' ss Score
8.66
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGTCTACACACGCCCTCCCTACCTTGTTCTGACCGTCATGAACGCCGTGTGCATCCTTCTAGAGAAGAAGCCCAACTGGACAACAGCAAAGCTGCTGCTCTCGGACACCAGCTTCCTAAAGCGACTAATTAACCTGGACAAGGACAGCATCCCCGATAAG
Seq A exon
GTGTTCTTGAGGCTCAAGAAGATTTTAAATCTGCCTGACTTCAACCCCAGCAAGATTGCTATGGTTTCTGTGGCTTGTTGCTCCATGTGTCAGTGGGTGATCGCCTTGAACAACTACCATGAAGTACAGAAG
Seq C2 exon
GTGGTGCGTCCTAAGCAGGCACAAGTGGCGGAGGCACAGAACGTTCTCCAAATTGCAAAGCAAAGGCTGTTTGAAAAGCAAAGAGGTTTACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.8=100)
A:
PF127772=MT=FE(12.8=100)
C2:
PF127772=MT=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACACACGCCCTCCCTAC
R:
ACCTCTTTGCTTTTCAAACAGCC
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]