HsaEX6037004 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225510366-225512534:+
Coord C1 exon
chr1:225510366-225510525
Coord A exon
chr1:225511924-225512055
Coord C2 exon
chr1:225512439-225512534
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATTAACTGTGTTCTCTCTAGGTT
3' ss Score
11.49
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AGTATACACACGGCCTCCCTTCCTTGTACTGACTGTCATGAATGCAGTGTGTATTCTTCTGCAAAAGAAACCTAACTGGGCAACGGCAAAGTTACTTCTTTCAGAAACTGGTTTCCTGAAAAAATTGATTAACCTTGACAAGGACAGCATACCTGATAAG
Seq A exon
GTTTTCGTGAAGCTAAAAAAAATTGTAACCTTACCTGATTTCAACCCACACAAGATTTCGCTGGTTTCTGTTGCTTGTTGCTCCCTGTGCCAGTGGGTTATAGCTTTGAATAACTACCATGAAGTACAGAAG
Seq C2 exon
GTTGTGGGCCCTAAACAAATCCAAGTAGCTGAAGCTCAAAACGTCCTTAAAATTGCGCGACAAAGACTTGCTGAGAAACAAAGAGGTTTACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'89-95,'89-94,90-95=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.8=100)
A:
PF127772=MT=FE(14.8=100)
C2:
PF127772=MT=FE(12.9=100),PF127812=AAA_9=PU(1.2=3.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACACACGGCCTCCCTTCC
R:
ACCTCTTTGTTTCTCAGCAAGTCT
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)