BtaEX6068022 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29045259-29054386:+
Coord C1 exon
chr16:29045259-29045353
Coord A exon
chr16:29046553-29046712
Coord C2 exon
chr16:29054255-29054386
Length
160 bp
Sequences
Splice sites
3' ss Seq
GATTTAACCATTTATTACAGAGT
3' ss Score
4.37
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AAAGCTGACAATGAATTAAAAAGTGTACTGCCAGCTCTCGACAAGGCAATTGTGGCTCTAAACGCCCTGGATAAAGCTGATGTCTCTGAATTAAG
Seq A exon
AGTATATACACGGCCTCCTTACCTTGTACTGACTGTCATGAATGCAGTTTGTATTCTTCTGCAAAAGAAACCTAACTGGACTACAGCAAAGTTACTTCTTTCAGAAACTGGTTTCCTAAAAAAATTGATTAACATTGACAAGGACAGCATACCTGAGAAG
Seq C2 exon
GCTTTCATAAAACTGAAGAAGATTTTAGTCTTACCTGATTTCAACCCAAACAAGATTGCTCTCGTTTCTGTTGCTTGTTGCTCTATGTGCCAGTGGGTTATAGCCTTGAATAACTACCATGAAGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.2=100)
A:
PF127772=MT=FE(15.8=100)
C2:
PF127772=MT=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGACAATGAATTAAAAAGTGT
R:
TTCTGTGCTTCATGGTAGTTATTCA
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]