MmuEX6029765 @ mm9
Exon Skipping
Gene
ENSMUSG00000047369 | Dnahc14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:183677316-183682283:+
Coord C1 exon
chr1:183677316-183677410
Coord A exon
chr1:183680208-183680367
Coord C2 exon
chr1:183682152-183682283
Length
160 bp
Sequences
Splice sites
3' ss Seq
ATGCTCATCCTGTCTTTCAGAGT
3' ss Score
8.85
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AAAACTTCCAATGAACTAAAAAATGTGCTGCCTTCTTTAGACAAGGCAATTGTGGCCCTAAATGCCCTGGATAAAAGTGATATTTCTGAATTAAG
Seq A exon
AGTCTACACTCGCCCTCCCTACCTTGTTCTGACGGTCATGAACGCTGTGTGTATCCTTCTAGAAAAGAAGCCCAACTGGGCGACAGCAAAGCTGCTGCTTTCAGACACCAGCTTCCTAAAGCGACTAATTAACATTGACAAGGACAGCATCCCTGACAAG
Seq C2 exon
GTGTTCTTGAGGCTCAAGAAGATTTTAAATCTGCCTGACTTCAACCCCAACAAGATTGCGATGGTTTCTGTGGCTTGTTGCTCCATGTGCCAGTGGGTGATTGCCTTGAATAACTACCATGAAGTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'49-50,'49-49,50-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.2=100)
A:
PF127772=MT=FE(15.8=100)
C2:
PF127772=MT=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGCTGCCTTCTTTAGACA
R:
TGTACTTCATGGTAGTTATTCAAGGC
Band lengths:
202-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: