RnoEX6045675 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:100050819-100055092:+
Coord C1 exon
chr13:100050819-100050913
Coord A exon
chr13:100053749-100053908
Coord C2 exon
chr13:100054961-100055092
Length
160 bp
Sequences
Splice sites
3' ss Seq
ATGATCACCCTGTCTTACAGGGT
3' ss Score
8.24
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AAAACTGCCAACGAGCTGAAAAGCGTGCTGCCTTCTTTAGACAAGGCAATCGTGGCCCTCAACGCCCTGGATAAAAGCGATATTTCCGAATTGAG
Seq A exon
GGTCTACACACGCCCTCCCTACCTTGTTCTGACCGTCATGAACGCCGTGTGCATCCTTCTAGAGAAGAAGCCCAACTGGACAACAGCAAAGCTGCTGCTCTCGGACACCAGCTTCCTAAAGCGACTAATTAACCTGGACAAGGACAGCATCCCCGATAAG
Seq C2 exon
GTGTTCTTGAGGCTCAAGAAGATTTTAAATCTGCCTGACTTCAACCCCAGCAAGATTGCTATGGTTTCTGTGGCTTGTTGCTCCATGTGTCAGTGGGTGATCGCCTTGAACAACTACCATGAAGTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.2=100)
A:
PF127772=MT=FE(15.8=100)
C2:
PF127772=MT=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGCCAACGAGCTGAAA
R:
TTCTGTACTTCATGGTAGTTGTTCA
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]