BtaEX6068023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29034307-29040578:+
Coord C1 exon
chr16:29034307-29034488
Coord A exon
chr16:29039100-29039208
Coord C2 exon
chr16:29040520-29040578
Length
109 bp
Sequences
Splice sites
3' ss Seq
AATACTTTCTTTCCCTTCAGGGA
3' ss Score
11.84
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AACTTAAAAGAAAGACTAGTTCCAACATGTGTCCAAATCCACAGAAGCATAAAAGAGTTGAACATAAAATACTTTCAAACAACTAGAAGGCGTTATTATATCACTCCCAATAACTACTTGCGATTCATGGATACATTTGTCCACATTTTGAAGTCCCGAGAGAAGAAAATGCAAAAGAAGAG
Seq A exon
GGAACGTTTCCATATGGGCCTATCCAAGATCCTGGAAACAACTGCTCTAGTCACAGATATGCAGGAGGAGCTCTTGATTCTTGGCCCTCAAATAGAACAAAAAACAAAG
Seq C2 exon
GAGAAAGAAATCCTAATGGAAAAACTACAGAAAGATTCCCAAGTGGTTGAGAAAGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'8-8,'8-7,9-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(27.4=80.3)
A:
PF127772=MT=PU(10.4=94.6)
C2:
PF127772=MT=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGACTAGTTCCAACATGTGT
R:
TGAACTTTCTCAACCACTTGGGA
Band lengths:
234-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]