RnoEX0001844 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:100045343-100049572:+
Coord C1 exon
chr13:100045343-100045476
Coord A exon
chr13:100048030-100048138
Coord C2 exon
chr13:100049447-100049572
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTACTCTGTTTCCCCTTCAGGAA
3' ss Score
12.41
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
ATGAAAGACTTGAGCATAAAATACTTTGAAGAAACGGGAAGACACTATTACATCACTCCCAGTTGCTACTTTAAGTTCCTGGAGACATTTACCCACAGTCTGCGGGTGAGACAAGAAGAAATGCAGACAAAGAG
Seq A exon
GAATCGCTTCTACATGGGACTTTCCAAGATCCTGGAGGCGACTGCACTGGTTACGGACATGCAGGAGGAACTCTTGGTTATCGGTCCTCAGATAGAACAAAAGGCAAAG
Seq C2 exon
GAAAAAGAGATCTTGATGGAAAAGCTGCGGAAAGACTCTCAAATCGTGGAAAAGGTGCAGGTGCTTGTGAAGCAGGATGAGGAGATTGTGGCTGAACAAGTGAAAATTGTGGAAGACTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741-'23-25,'23-24,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127772=MT=PU(10.4=94.6)
C2:
PF127772=MT=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATACTTTGAAGAAACGGGAAGACA
R:
CTGAGCATAGTCTTCCACAATTTTCA
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]