HsaEX6037008 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225492610-225496112:+
Coord C1 exon
chr1:225492610-225492791
Coord A exon
chr1:225495163-225495271
Coord C2 exon
chr1:225495987-225496112
Length
109 bp
Sequences
Splice sites
3' ss Seq
AATACTTTTTCTTCCTTCAGGGA
3' ss Score
10.56
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AACTTGAAAGAAAAACTTGCCCCAACATGTGTCCAAATCCACAAAAGCATGAAAGACTTGAACAGAAAATACTTTGAAGAAACTGGAAGATTTTATTATACCACTCCCAATAGCTACTTGCAATTTATGGAAACATTTGCACACATTTTGAGGGCACGAGAGGAAGAGATGCAAACAAAGAG
Seq A exon
GGATCGCTTCCATATGGGTCTATCCACAATCCTGGAAGCAACCACTCTAGTTACAGAAATGCAAGAAGAGCTCTTGATTCTTGGCCCTCAAGTAGAACAAAAAACAAAG
Seq C2 exon
GAAACAGAAACTCTAATGGAAAAACTACGGAAAGATTCACAAGTAGTTGAGAAAGTTCAGATGCTTGTTAAACAGGATGAAGAAATTGTGGCAGAAGAAGTAAGAATTGTGGAAGATTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'85-91,'85-90,86-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=82.0)
A:
PF127772=MT=PU(11.8=94.6)
C2:
PF127772=MT=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCAACATGTGTCCAAAT
R:
TGCCACAATTTCTTCATCCTGT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)